cl-bio-devel April 2008

cl-bio-devel@common-lisp.net

2 participants
5 discussions

[Cl-bio-devel] Auto-nag: cl-bio please update your webpage
by root＠common-lisp.net 28 Apr '08

28 Apr '08

You are being nagged on because you have not created a sensible default webpage for your project. Please do so or you will be nagged again next week. All we ask is that you type in something about the project and perhaps some links to mailinglists etc. See common-lisp.net/project/clo/sp/index.html for a reasonable template. Some projects host their webpages somewhere else (eg. http://common-lisp.net/project/cl-ppcre) and if you're in the same situation you may put the following in your index.shtml: <HTML> <HEAD> <META HTTP-EQUIV="refresh" CONTENT="0;URL=YOURURLGOESHERE"> </HEAD> <BODY> </BODY> </HTML> Any questions? You can reach the author of this cronjob at clo-devel(a)common-lisp.net Thanks!

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[Cl-bio-devel] Project merging
by Albert Krewinkel 23 Apr '08

23 Apr '08

Hello, When I found out about cl-bio a few days ago, I was thrilled to find someone else working on a general common lisp bio package. I started a similar effort some time ago, named CL Computational Biology[1]. It's not in my interest to duplicate any functionality, which is why I'd like to merge the two code bases. My main suggestion is to merge the bio-sequence implementations. During the implementation of CLCB bio-sequences, we focused on the intuitive handling of sub-intervals. The concept applied here is to regard bio-sequences as discrete intervals. That way, other sequences and features can simply be mapped upon their respective 'supersequence', keeping information of e.g. where an amino acid 'came from'. This also allows for set theoretic handling of bio-sequences. The concept is a modification of the modeling used by the Ensembl project[2]. Disregarding your opinion towards the proposed merge, I'd be delighted to help building a community driven Bio project in eather case. Best, Albert [1] No website yet, but some docs in the svn repository: svn co http://clcb.svn.sf.net/svnroot/clcb/trunk clcb [2] http://www.ensembl.org/info/using/api/core/index.html -- Albert Krewinkel <krewink (at) inb.uni-luebeck.de> University of Luebeck, Institute for Neuro- and Bioinformatics http://www.inb.uni-luebeck.de/~krewink/

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[Cl-bio-devel] Auto-nag: cl-bio please update your webpage
by root＠common-lisp.net 21 Apr '08

21 Apr '08

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[Cl-bio-devel] Auto-nag: cl-bio please update your webpage
by root＠common-lisp.net 14 Apr '08

14 Apr '08

1 0

[Cl-bio-devel] Auto-nag: cl-bio please update your webpage
by root＠common-lisp.net 07 Apr '08

07 Apr '08

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cl-bio-devel April 2008